Inferring the Dynamics of Diversification: A Coalescent Approach

A novel approach to infer diversification dynamics shows that biodiversity is still expanding but at a slower rate than in the past

Estimating mangrove canopy height and above-ground biomass in the Everglades National Park with airborne LiDAR and TanDEM-X data

Mangrove forests are important natural ecosystems due to their ability to capture and store large amounts of carbon. Forest structural parameters, such as canopy height and above-ground biomass (AGB), provide a good measure for monitoring temporal changes in carbon content. The protected coastal mangrove forest of the Everglades National Park (ENP) provides an ideal location for studying these processes, as harmful human activities are minimal. We estimated mangrove canopy height and AGB in the ENP using Airborne LiDAR/Laser (ALS) and TanDEM-X (TDX) datasets acquired between 2011 and 2013. Analysis of both datasets revealed that mangrove canopy height can reach up to ~25 m and AGB can reach up to ~250 Mg·ha-1. In general, mangroves ranging from 9 m to 12 m in stature dominate the forest canopy. The comparison of ALS and TDX canopy height observations yielded an R2 = 0.85 and Root Mean Square Error (RMSE) = 1.96 m. Compared to a previous study based on data acquired during 2000-2004, our analysis shows an increase in mangrove stature and AGB, suggesting that ENP mangrove forests are continuing to accumulate biomass. Our results suggest that ENP mangrove forests have managed to recover from natural disturbances, such as HurricaneWilma

Aligning biodiversity conservation and agricultural production in heterogeneous landscapes

Understanding the trade-offs between biodiversity conservation and agricultural production has become a fundamental question in sustainability science. Substantial research has focused on how species’ populations respond to agricultural intensification, with the goal to understand whether conservation policies that spatially separate agriculture and conservation or, alternatively, integrate the two are more beneficial. Spatial heterogeneity in both species abundance and agricultural productivity have been largely left out of this discussion, although these patterns are ubiquitous from local to global scales due to varying land capacity. Here, we address the question of how to align agricultural production and biodiversity conservation in heterogeneous landscapes. Using model simulations of species abundance and agricultural yields, we show that trade-offs between agricultural production and species’ abundance can be reduced by minimizing the cost (in terms of species abundance) of agricultural production. We find that when species’ abundance and agricultural yields vary across landscapes, the optimal strategy to minimize trade-offs is rarely pure land sparing or land sharing. Instead, landscapes that combine elements of both strategies are optimal. Additionally, we show how the reference population of a species is defined has important influences on optimization results. Our findings suggest that in the real world, understanding the impact of heterogeneous land capacity on biodiversity and agricultural production is crucial to designing multi-use landscapes that jointly maximize conservation and agricultural benefits.Fil: Butsic, Van. University of California at Berkeley; Estados Unidos. Berkeley University; Estados UnidosFil: Kuemmerle, Tobias. Universität zu Berlin; AlemaniaFil: Pallud, Leo. ENSTA ParisTech; FranciaFil: Helmstedt, Kate J.. Queensland University of Technology; AustraliaFil: Macchi, Leandro. Universidad Nacional de Tucumán. Instituto de Ecología Regional. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Instituto de Ecología Regional; Argentina. Universität zu Berlin; AlemaniaFil: Potts, Matthew D.. University of California at Berkeley; Estados Unido

Transformation and endurance of Indigenous hunting: Kadazandusun-Murut bearded pig hunting practices amidst oil palm expansion and urbanization in Sabah, Malaysia

Land-use change and political–economic shifts have shaped hunting patterns globally, even as traditional hunting practices endure across many local socio-cultural contexts. The widespread expansion of oil palm cultivation, and associated urbanization, alters land-use patterns, ecological processes, economic relationships, access to land and social practices. In particular, we focus on the socio-ecological dynamics between Kadazandusun-Murut (KDM) hunters in Sabah, Malaysian Borneo, and bearded pigs (Sus barbatus; Malay: ‘babi hutan’), the favoured game animal for non-Muslim communities throughout much of Borneo. We conducted 38 semi-structured interviews spanning over 50 hr with bearded pig hunters, asking them about contemporary hunting practices and motivations, changes in hunting practices, changes in pig behaviour, and patterns of animal protein consumption in village and urban contexts. Amidst widespread land-use change, primarily driven by oil palm expansion, respondents reported substantially different characteristics of hunting in oil palm plantations as compared to hunting in forests. Additionally, 17 of 38 hunters—including 71% (10/14) of hunters who started hunting before 1985, compared to 26% (6/23) of hunters who started hunting in 1985 or later—mentioned that bearded pigs are behaving in a more skittish or fearful way as compared to the past. Our respondents also reported reductions in hunting frequency and wild meat consumption in urban contexts as compared to rural contexts. However, despite these substantial changes in hunting and dietary practices, numerous KDM hunting motivations, hunting techniques and socio-cultural traditions have endured over the last several decades. For some, bearded pig meat remains deeply tied to food provision, gifting and sharing customs, and cultural components of celebrations and feasts. Oil palm has cultivated new hunting practices that differ from those in forests, and has potentially contributed to altered bearded pig behaviour due to increased hunting accessibility. Together, oil palm and urbanization are helping reshape the KDM-bearded pig socio-ecological system. In light of these reshaped connections, we recommend location-specific management approaches that ensure fair access to the dietary and social benefits of bearded pig hunting while preserving the critical conservation needs of bearded pig populations and habitat. These twin goals are particularly urgent given the confirmed outbreak of African Swine Fever (ASF), and mass deaths of domestic pigs and wild bearded pigs, in Sabah and Kalimantan in 2021

Land management explains major trends in forest structure and composition over the last millennium in California's Klamath Mountains

For millennia, forest ecosystems in California have been shaped by fire from both natural processes and Indigenous land management, but the notion of climatic variation as a primary controller of the pre-colonial landscape remains pervasive. Understanding the relative influence of climate and Indigenous burning on the fire regime is key because contemporary forest policy and management are informed by historical baselines. This need is particularly acute in California, where 20th-century fire suppression, coupled with a warming climate, has caused forest densification and increasingly large wildfires that threaten forest ecosystem integrity and management of the forests as part of climate mitigation efforts. We examine climatic versus anthropogenic influence on forest conditions over 3 millennia in the western Klamath Mountains—the ancestral territories of the Karuk and Yurok Tribes—by combining paleoenvironmental data with Western and Indigenous knowledge. A fire regime consisting of tribal burning practices and lightning were associated with long-term stability of forest biomass. Before Euro-American colonization, the long-term median forest biomass was between 104 and 128 Mg/ha, compared to values over 250 Mg/ha today. Indigenous depopulation after AD 1800, coupled with 20th-century fire suppression, likely allowed biomass to increase, culminating in the current landscape: a closed Douglas fir–dominant forest unlike any seen in the preceding 3,000 y. These findings are consistent with precontact forest conditions being influenced by Indigenous land management and suggest large-scale interventions could be needed to return to historic forest biomass levels

Socio-ecological factors shape the distribution of a cultural keystone species in Malaysian Borneo

Biophysical and socio-cultural factors have jointly shaped the distribution of global biodiversity, yet relatively few studies have quantitatively assessed the influence of social and ecological landscapes on wildlife distributions. We sought to determine whether social and ecological covariates shape the distribution of a cultural keystone species, the bearded pig (Sus barbatus). Drawing on a dataset of 295 total camera trap locations and 25,755 trap days across 18 field sites and three years in Sabah and Sarawak, Malaysian Borneo, we fitted occupancy models that incorporated socio-cultural covariates and ecological covariates hypothesized to influence bearded pig occupancy. We found that all competitive occupancy models included both socio-cultural and ecological covariates. Moreover, we found quantitative evidence supporting Indigenous pig hunting rights: predicted pig occupancy was positively associated with predicted high levels of Indigenous pig-hunting groups in low-accessibility areas, and predicted pig occupancy was positively associated with predicted medium and low levels of Indigenous pig-hunting groups in high-accessibility areas. These results suggest that bearded pig populations in Malaysian Borneo should be managed with context-specific strategies, promoting Indigenous pig hunting rights. We also provide important baseline information on bearded pig occupancy levels prior to the 2020–2021 outbreak of African Swine Fever (ASF), which caused social and ecological concerns after mass dieoffs of bearded pigs in Borneo. The abstract provided in Malay is in the Supplementary file

Socio-ecological factors shape the distribution of a cultural keystone species in Malaysian Borneo

Biophysical and socio-cultural factors have jointly shaped the distribution of global biodiversity, yet relatively few studies have quantitatively assessed the influence of social and ecological landscapes on wildlife distributions. We sought to determine whether social and ecological covariates shape the distribution of a cultural keystone species, the bearded pig (Sus barbatus). Drawing on a dataset of 295 total camera trap locations and 25,755 trap days across 18 field sites and three years in Sabah and Sarawak, Malaysian Borneo, we fitted occupancy models that incorporated socio-cultural covariates and ecological covariates hypothesized to influence bearded pig occupancy. We found that all competitive occupancy models included both socio-cultural and ecological covariates. Moreover, we found quantitative evidence supporting Indigenous pig hunting rights: predicted pig occupancy was positively associated with predicted high levels of Indigenous pig-hunting groups in low-accessibility areas, and predicted pig occupancy was positively associated with predicted medium and low levels of Indigenous pig-hunting groups in high-accessibility areas. These results suggest that bearded pig populations in Malaysian Borneo should be managed with context-specific strategies, promoting Indigenous pig hunting rights. We also provide important baseline information on bearded pig occupancy levels prior to the 2020–2021 outbreak of African Swine Fever (ASF), which caused social and ecological concerns after mass dieoffs of bearded pigs in Borneo. The abstract provided in Malay is in the Supplementary file

Rad21-Cohesin Haploinsufficiency Impedes DNA Repair and Enhances Gastrointestinal Radiosensitivity in Mice

Approximately half of cancer-affected patients receive radiotherapy (RT). The doses delivered have been determined upon empirical experience based upon average radiation responses. Ideally higher curative radiation doses might be employed in patients with genuinely normal radiation responses and importantly radiation hypersensitive patients would be spared the consequences of excessive tissue damage if they were indentified before treatment. Rad21 is an integral subunit of the cohesin complex, which regulates chromosome segregation and DNA damage responses in eukaryotes. We show here, by targeted inactivation of this key cohesin component in mice, that Rad21 is a DNA-damage response gene that markedly affects animal and cell survival. Biallelic deletion of Rad21 results in early embryonic death. Rad21 heterozygous mutant cells are defective in homologous recombination (HR)-mediated gene targeting and sister chromatid exchanges. Rad21+/− animals exhibited sensitivity considerably greater than control littermates when challenged with whole body irradiation (WBI). Importantly, Rad21+/− animals are significantly more sensitive to WBI than Atm heterozygous mutant mice. Since supralethal WBI of mammals most typically leads to death via damage to the gastrointestinal tract (GIT) or the haematopoietic system, we determined the functional status of these organs in the irradiated animals. We found evidence for GIT hypersensitivity of the Rad21 mutants and impaired bone marrow stem cell clonogenic regeneration. These data indicate that Rad21 gene dosage is critical for the ionising radiation (IR) response. Rad21 mutant mice thus represent a new mammalian model for understanding the molecular basis of irradiation effects on normal tissues and have important implications in the understanding of acute radiation toxicity in normal tissues

Models of Traumatic Cerebellar Injury

Traumatic brain injury (TBI) is a major cause of morbidity and mortality worldwide. Studies of human TBI demonstrate that the cerebellum is sometimes affected even when the initial mechanical insult is directed to the cerebral cortex. Some of the components of TBI, including ataxia, postural instability, tremor, impairments in balance and fine motor skills, and even cognitive deficits, may be attributed in part to cerebellar damage. Animal models of TBI have begun to explore the vulnerability of the cerebellum. In this paper, we review the clinical presentation, pathogenesis, and putative mechanisms underlying cerebellar damage with an emphasis on experimental models that have been used to further elucidate this poorly understood but important aspect of TBI. Animal models of indirect (supratentorial) trauma to the cerebellum, including fluid percussion, controlled cortical impact, weight drop impact acceleration, and rotational acceleration injuries, are considered. In addition, we describe models that produce direct trauma to the cerebellum as well as those that reproduce specific components of TBI including axotomy, stab injury, in vitro stretch injury, and excitotoxicity. Overall, these models reveal robust characteristics of cerebellar damage including regionally specific Purkinje cell injury or loss, activation of glia in a distinct spatial pattern, and traumatic axonal injury. Further research is needed to better understand the mechanisms underlying the pathogenesis of cerebellar trauma, and the experimental models discussed here offer an important first step toward achieving that objective

Crop pests and predators exhibit inconsistent responses to surrounding landscape composition

The idea that noncrop habitat enhances pest control and represents a win–win opportunity to conserve biodiversity and bolster yields has emerged as an agroecological paradigm. However, while noncrop habitat in landscapes surrounding farms sometimes benefits pest predators, natural enemy responses remain heterogeneous across studies and effects on pests are inconclusive. The observed heterogeneity in species responses to noncrop habitat may be biological in origin or could result from variation in how habitat and biocontrol are measured. Here, we use a pest-control database encompassing 132 studies and 6,759 sites worldwide to model natural enemy and pest abundances, predation rates, and crop damage as a function of landscape composition. Our results showed that although landscape composition explained significant variation within studies, pest and enemy abundances, predation rates, crop damage, and yields each exhibited different responses across studies, sometimes increasing and sometimes decreasing in landscapes with more noncrop habitat but overall showing no consistent trend. Thus, models that used landscape-composition variables to predict pest-control dynamics demonstrated little potential to explain variation across studies, though prediction did improve when comparing studies with similar crop and landscape features. Overall, our work shows that surrounding noncrop habitat does not consistently improve pest management, meaning habitat conservation may bolster production in some systems and depress yields in others. Future efforts to develop tools that inform farmers when habitat conservation truly represents a win–win would benefit from increased understanding of how landscape effects are modulated by local farm management and the biology of pests and their enemies